PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24619
Common NameKK1_026048
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YB
Protein Properties Length: 213aa    MW: 23857.7 Da    PI: 6.5114
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24619genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.64.8e-5548144197
          NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                    vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yreleg+
  C.cajan_24619  48 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGD 143
                    69*********************************************************************************************9 PP

          NF-YB  97 k 97 
                    +
  C.cajan_24619 144 R 144
                    8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.4E-5143151IPR009072Histone-fold
SuperFamilySSF471131.06E-3851150IPR009072Histone-fold
PfamPF008084.2E-2654118IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.6E-1782100No hitNo description
PROSITE patternPS00685085101IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.6E-17101119No hitNo description
PRINTSPR006156.6E-17120138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDTGGFHGYR KLPNTSSASG LKLSVSDMNN MRAENNNNHT GEDNECTVRE QDRFMPIANV  60
IRIMRKILPP HAKISDDAKE TIQECVSEYI SFITGEANER CQREQRKTIT AEDVLWAMSK  120
LGFDDYIEPL TMYLHRYREL EGDRTSMRGE PLGKRTVEYA TLGVATAFVP PPFHPNGYFS  180
AAMGSYVRDA HANNAASSHH PGISNAEPNG RSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-4047139193NF-YB
4awl_B5e-4047139294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4047139294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909841e-148BT090984.1 Soybean clone JCVI-FLGm-5H12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236625.11e-126transcription factor LEC1-A
RefseqXP_014508214.11e-126PREDICTED: nuclear transcription factor Y subunit B-6
SwissprotQ84W663e-74NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLA0A151SBE41e-162A0A151SBE4_CAJCA; Nuclear transcription factor Y subunit B-6
STRINGGLYMA07G39820.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27283279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.12e-73nuclear factor Y, subunit B6